COVID-19 Scan for Dec 04, 2020

News brief

CDC: 1 in 5 hospitalized younger adults with COVID-19 need ICU care

While younger adults with no underlying health conditions have been considered safer from COVID-19's severe outcomes, of those who were hospitalized, 22% were admitted to intensive care units (ICUs), 10% needed mechanical ventilation, and 0.6% (3 patients) died, reports a study published yesterday in Clinical Infectious Diseases.

The researchers, led by scientists with the Centers for Disease Control and Prevention's (CDC's) COVID-19–Associated Hospitalization Surveillance Network (COVID-NET) team, used data from the network to look at patients to look at patients hospitalized with COVID-19 from March through August. During this period, 31.8% of the 44,865 patients in the COVID-NET system were adults under 50, of which 513 (3.9%, the study's cohort) had sufficient data to indicate they had no underlying diseases.

The study's patients most commonly experienced cough (61.7%), fever or chills (64.7%), and shortness of breath (63.4%) at the time of admission. According to their discharge records, though, health providers eventually diagnosed pneumonia in 51.1%, acute respiratory failure in 37.4%, and sepsis in 16.6%. The median hospital stay was 4 days, or 5 days if the patient was admitted to the ICU.

While the study did not look at the reasons behind these hospitalizations, the researchers noted that Hispanics represented 42.1% of patients compared with 16% in the general population. Additionally, men made up 74% of cases. The researchers say the association between men's increased angiotensin-converting enzyme 2 levels and COVID-19 severity may contribute to the level of severe disease found in the study population.
Dec 3 Clin Infect Dis study

Report shows connection between COVID-19, child inflammatory syndrome

A French study in Eurosurveillance yesterday shows an association between infection with SARS-CoV-2, the virus that causes COVID-19, and multisystem inflammatory syndrome in children (MIS-C), which is similar to Kawasaki disease. Researchers found 25-fold higher odds of exposure to the virus among patients with MIS-C.

Surges in MIS-C illness reports led to a UK National Health Service alert on Apr 25, which was followed by several regional case studies. No case-control studies—matching patients with and without the disease—have been conducted to date, the authors of the new study say. MIS-C symptoms can include fever, rash, conjunctivitis, abdominal pain, shock, elevated inflammatory markers, and cardiac damage.

This retrospective case-control study included 23 children with MIS-C admitted to a Paris hospital (mean age 6.8 years; range, 0.3 to 16.6 years) and 102 control patients (mean age 5.8 years; range 0.05 to 16.0 years) who visited Paris metropolitan area pediatric clinics from Apr 14 to May 26. Nasal swab samples for all children were tested for SARS-CoV-2 using reverse transcription polymerase chain reaction (RT-PCR), and immunoassay tests of blood serum were used to identify anti–SARS-CoV-2 antibodies.

"Overall, 17 of 23 (74%) cases and 11 of 102 (11%) controls tested positive for SARS-CoV-2 by RT-PCR and/or serology (matched OR [odds ratio]: 26.4; 95% confidence interval (CI): 6.0–116.9)," the study authors found. "The association remained significant when limiting the assessment to RT-PCR results and serological results separately (matched OR: 13.9; 95% CI: 2.8 –68.6 and 27.7; 95% CI, 6.3–122.7, respectively)."

The strong association highlights the need for greater surveillance of infected children. "Clinicians should keep a high level of suspicion for [MIS-C] illness during the COVID-19 pandemic," the authors wrote.
Dec 3 Euro Surveill study

News Scan for Dec 04, 2020

News brief

Extensively drug-resistant Klebsiella pneumoniae strains detected in Italy

Two extensively drug-resistant strains of Klebsiella pneumoniae identified in two patients at an Italian hospital in May appear to be a dangerous variant of a strain that caused an outbreak in Tuscany in 2018 and 2019, Italian scientists reported yesterday in Eurosurveillance.

The strains of K pneumoniae carrying the blaNDM gene were isolated from two critically ill patients at University Hospital Pisa and were resistant to all tested antibiotics, including colistin, fosfomycin, and tigecycline.

Genomic analysis indicated that both strains belonged to the ST147 sequence type, which is the same sequence type as the NDM-1-producing K pneumoniae clone that caused a large outbreak in Tuscany in 2018-2019 and infected or colonized more than 300 patients at the same hospital. The outbreak clone was resistant to all beta-lactam antibiotics but susceptible to colistin, fosfomycin, and tigecycline.

A comparison of the ST147 K pneumoniae isolates from the two patients with isolates from the earlier outbreak showed the sequences formed a cluster, but the 2020 isolates harbored an NDM-9 gene containing additional resistance mutations. The authors of the report say the new variant likely emerged from a subgroup of highly related strains from the 2018-2019 outbreak and will be more challenging for clinicians to treat because of its resistance to additional antibiotic classes.

"The persistence of K. pneumoniae ST147 isolation suggests that this clone can be considered as endemic in the Pisa University Hospital and there is risk of spread to other hospitals in Tuscany and elsewhere," the authors wrote. "Several actions, such as systematic screening of hospitalised patients, contact precautions, and cohorting of colonised/infected patients are ongoing to contain the spread of this clone."
Dec 3 Euro Surveill rapid communication

Three countries add to their polio totals

Three countries—Pakistan, the Democratic Republic of the Congo (DRC), and Mali—reported more polio cases over the past week, the Global Polio Eradication Initiative (GPEI) said in its latest weekly update.

Pakistan reported one more wild poliovirus type 1 (WPV1) case, which involves a patient from Balochistan province, lifting its total for the year to 82. Earlier this week, assailants in the Khyber Pakhtunkhwa province city of Bannu killed a police officer who was guarding a polio immunization team, Press Trust of India (PTI) reported.

In Africa, the DRC and Mali both reported more circulating vaccine-derived poliovirus type 2 (cVDPV2) cases. The DRC reported five new cases from three different provinces, putting its 2020 total at 68. And the GPEI said two more were reported from Mali. Though the details aren't clear, it said the country has reported 26 cases this year so far.

In another African development, the GPEI said one of the continent's biggest polio immunization campaigns just wrapped up in Chad, where 3.3 million in 91 districts were vaccinated.
Dec 3 GPEI weekly update
Dec 3 PTI report

Six countries report more high path avian flu in poultry and wild birds

In the latest highly pathogenic avian flu developments, Germany, Poland, and the United Kingdom reported more outbreaks in poultry and China, France, and Belgium reported H5N8 detections in wild birds, according to the latest notifications from the World Organization for Animal Health (OIE).

Germany reported one more H5N8 outbreak, this time at a layer farm in Mecklenburg-Vorpommern state, which has recently reported other similar events. The latest outbreak began on Nov 30, killing 50 of 28,500 susceptible birds. Also, Poland reported an outbreak involving the same strain at a turkey broiler farm in Mazowieckie province that began on Dec 1, killing 1,703 of 117,108 susceptible birds.

Elsewhere in Europe, the United Kingdom reported two more H5N8 outbreaks, one at a turkey-fattening farm in Hambleton, North Yorkshire, and another in poultry and captive birds at a location near Melton Mowbray in Leicestershire. In response to the recent rise in outbreak activity, the UK's Department for Environment, Food, and Rural Affairs (DEFRA) ordered new measures that take effect Dec 14, including a requirement that all bird keepers keep their animals indoors and follow strict biosecurity measures.

Three other countries reported more highly pathogenic avian influenza, mostly H5N8 in wild birds. Belgium reported H5N8 in four outbreaks in waterfowl in West Flanders and East Flanders provinces, France reported H5 in a wild goose found dead in Morbihan department in Brittany, and China reported H5N8 in mute swans at a nature park in Shanxi province.
Dec 3 OIE report on H5N8 in Germany
Dec 3 OIE report on H5N8 in Poland
Dec 3 DEFRA statement
Dec 3 OIE report on H5N8 in the UK
Dec 4 OIE report on H5N8 in Belgian wild birds
Dec 2 OIE report on H5 in French wild birds
Nov 30 OIE report on H5N8 in Chinese waterfowl

In low-pathogenic developments, South Africa reported another H7 outbreak at a commercial ostrich farm in Western Cape province. The outbreak began on Nov 2 and sickened 44 of 208 birds at the facility.
Dec 3 OIE report on low-path H7 in South Africa

ASP Scan (Weekly) for Dec 04, 2020

News brief

Our weekly wrap-up of antimicrobial stewardship & antimicrobial resistance scans

Extensively drug-resistant Klebsiella pneumoniae strains detected in Italy

Higher-than-expected antibiotic prescribing during UK COVID lockdown

Originally published by CIDRAP News Dec 2

Telephone consultations could be the reason why antibiotic prescribing at general practices in the United Kingdom was higher than expected during the first COVID-19 lockdown, researchers with the University of Nottingham reported yesterday in the Lancet Infectious Diseases.

Examination of National Health Service data from Apr 1 to Aug 31 showed that while the number of face-to-face appointments fell by 51.5% compared with the corresponding period in 2019, telephone consultations increased by 270.5%. The absolute number of appointments was 20.8% lower than in the corresponding period in 2019.

Based on the reduction in the absolute number of appointments, the researchers determined that the 15.5% decrease in antibiotic prescribing in 2020 was still 6.7% higher than expected. They suggest this finding indicates antibiotic prescribing rates are higher in remote consultations than during in-person consultations.

"This increase could reflect the greater diagnostic uncertainty that results from an inability to examine patients and perform investigations during telephone appointments, which might lead clinicians to take greater precautions in cases of possible infection," the authors wrote.

The authors also said that with telephone consultation volumes remaining high during the pandemic, clinicians need support to use antibiotics appropriately.
Dec 1 Lancet Infect Dis correspondence

CARB-X to fund treatments for S aureus pneumonia, Pseudomonas

Originally published by CIDRAP News Dec 1

CARB-X today announced two new funding awards for German scientists working on therapies for difficult-to-treat bacterial infections.

The first award, worth up to $1.33 million, will go to researchers from the Helmholtz Centre for Infection Research (HZI) and the Lead Discovery Center GmbH for development of a small molecule that inhibits the Staphylococcus aureus toxin a-hemolysin, which damages lung tissue and immune cells. The drug would be used in combination with antibiotics to treat pneumonia caused by S aureus.

"We urgently need better treatment options for patients with pneumonia caused by S. aureus," Mark Bronstrup, lead researcher and head of chemical biology at the HZI, said in a CARB-X press release. "In the long term, however, we will not achieve this by killing the pathogens with antibiotics alone. Instead, we need preventive or accompanying therapies that prevent damage to the lungs by bacterial toxins."

Bronstrup and colleagues could be eligible for an additional $7.44 million from CARB-X (the Combating Antibiotic Resistant Bacteria Biopharmaceutical Accelerator) if the project meets certain milestones.

Another team of HZI researchers will receive $6.31 million from CARB-X to develop an innovative treatment for Pseudomonas aeruginosa infections in cystic fibrosis patients.

Since its launch in 2016, CARB-X has awarded more than $260 million for pre-clinical development of new antibiotics, vaccines, diagnostics, and other treatments for bacterial infections. There are currently 49 active projects focused exclusively on drug-resistant bacteria in the CARB-X portfolio.
Dec 1 CARB-X press release

GARDP announces joint effort on antibiotics, diagnostics for STIs

Originally published by CIDRAP News Dec 1

The Global Antibiotic Research and Development Partnership (GARDP) yesterday announced the signing of a memorandum of understanding with the Foundation for Innovative New Diagnostics (FIND) and the World Health Organization (WHO) to explore joint efforts that could improve sustainable access to antibiotics and protect them against the emergence of resistance.

The initial focus of the groups will be on sexually transmitted infections (STIs), including drug-resistant gonorrhea, which the WHO has identified as a priority infection urgently requiring new antibiotics. Their efforts will focus on strengthening STI case management by fostering access to new tests and treatments, evaluating public health needs for new diagnostic tests and treatments for gonorrhea, assessing appropriate use and stewardship of antibiotics, and defining strategies to monitor and delay the emergence of resistance to gonorrhea treatments.

GARDP is currently working with partners to develop a new treatment for gonorrhea, while FIND is working on rapid point-of-care diagnostics for gonorrhea, including tests that detect resistance. Both efforts have been aided by the WHO.
Nov 30 GARDP press release

Experts develop research agenda for pediatric infections, stewardship

Originally published by CIDRAP News Nov 30

A group of clinicians and researchers with expertise in pediatric healthcare-associated infections (HAIs) and antimicrobial stewardship has developed a list of high-priority research topics for improving health outcomes in children.

Published last week in Infection Control and Hospital Epidemiology, the list of recommendations was developed through a multistep, 7-month process that included literature review, interactive teleconferences, web-based surveys, and two in-person meetings. At the end of the process, experts from the Centers for Disease Control and Prevention and academic children's hospitals across the country came up with six HAI topics and six antimicrobial stewardship topics as high-priority targets for future research.

The authors of the paper say the research agenda is necessary because HAI rates in children are similar to those in adults, but pediatric HAIs differ significantly from those experienced by adults, and HAI prevention strategies developed and tested in adult settings cannot be easily implemented in pediatric settings. In addition, while general principles of antimicrobial stewardship are shared across patient populations and settings, there are important differences between adult and pediatric patients that need further investigation.

The six high-priority HAI topics included judicious testing for Clostridioides difficile infection, chlorhexidine bathing, measuring and preventing hospital bloodstream infection rates, surgical-site infection prevention, and surveillance and prevention of multidrug-resistant gram-negative rod infections.

The six antimicrobial stewardship topics included beta-lactam allergy de-labeling, judicious use of perioperative antibiotics, intravenous-to-oral conversion of antimicrobial therapy, developing a patient-level "harm index" for antibiotic exposure, and benchmarking and/or peer comparison of antibiotic use in common pediatric inpatient conditions.
Nov 26 Infect Control Hosp Epidemiol abstract