An analysis of invasive Escherichia coli samples from newborns at a US pediatric hospital found rising rates of resistance to recommended antibiotics, researchers reported today in Open Forum Infectious Diseases.
For the study, researchers from the University of Missouri-Kansas City School of Medicine and Children’s Mercy Hospital Kansas City identified and analyzed E coli isolated from blood cultures of newborns at the hospital from 2006 to 2021. E coli is a major neonatal pathogen in the United States, and leading cause of sepsis in newborns. The researchers wanted to investigate the clinical characteristics of newborns with E coli bacteremia (bacteria in the blood), and the pattern of antibiotic resistance in E coli isolates over time.
“This knowledge is crucial to develop effective preventative and treatment strategies for this devastating disease,” the researchers wrote.
Ongoing surveillance needed
Of the 54 newborns identified with E coli bacteremia, seven developed early-onset sepsis (within 72 hours of birth or less), 12 were treated for E coli meningitis, and two had necrotizing enterocolitis. Five of the newborns died, including three who were born preterm. The mortality rate was 19% in preterm newborns versus 5% for term newborns.
Antibiotic susceptibility analysis found 54% of E coli isolates overall were nonsusceptible to ampicillin and 11% were nonsusceptible to gentamicin—the two antibiotics recommended for first-line treatment in newborns with sepsis—with ampicillin nonsusceptibility rising from 46% to 61% between 2006-2013 and 2014-2021. The percentage of isolates that were nonsusceptible to cefazolin, an alternative therapy, rose from 8% to 36%.
Whole genome sequencing revealed the most prominent E coli sequence types (STs) were ST95 (17%), ST69 (11%), and ST131 (7%), and 43% of isolates contained the K1 capsule, which plays a crucial role in disease progression.
The authors say ongoing surveillance of resistance in larger US populations is needed to help clinicians select effective antibiotic regimens in newborns with sepsis.
“Understanding genomic traits and molecular epidemiology trends of neonatal E. coli invasive strains is also crucial to develop novel preventative and treatment strategies that are urgently needed,” they wrote.